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Sample GSM82354 Query DataSets for GSM82354
Status Public on Apr 30, 2007
Title 1243_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13649.8105 257.5744 G 147.3649 13727.8105 5729 14946.1846 197 15.83755589 93.15521707 78.4602 78 10.1035 234 257.5744
1002 1 555.8679 10.4893 G 7.1934 629.8679 691 303.3351 108 11.72646046 87.56172443 75.4588 74 9.0412 176 10.4893
1003 1 0.4516 0.0085 L 0.8085 78.4516 77 12.6129 31 6.282549381 97.03928942 80.2407 78 12.6929 168 0.0085
1004 1 8.1667 0.1541 L 0.9372 88.1667 89 11.8552 54 8.291859627 94.07490358 79.3136 80 9.3833 122 0.1541
1005 1 6.5773 0.1241 L 0.9248 82.5773 81 14.1675 97 11.11324596 89.2925835 76.5907 76 8.8617 223 0.1241
1006 1 22.7167 0.4287 G 1.0941 95.7167 95 12.2326 60 8.740387917 87.48324271 73.9706 73 9.6555 176 0.4287
1007 1 26.697 0.5038 G 1.1365 101.697 100 13.3303 66 9.166996002 89.48591668 74.6758 75 9.6573 188 0.5038
1008 1 14493.9229 273.5029 G 146.9872 14575.9229 6867 15067.4229 183 15.26443005 99.16455335 82.9167 82 11.443 124 273.5029
1009 1 374.3367 7.0638 G 4.9391 451.3367 483 159.9834 98 11.17038345 91.38071576 77.0989 77 9.5871 188 7.0638
1010 1 580.6771 10.9575 G 7.2776 656.6771 726 289.5108 96 11.05581284 90.23212827 76.2541 76 9.4881 187 10.9575
1011 1 53.4133 1.0079 G 1.4344 127.4133 127 17.5059 75 9.772049904 88.82685312 74.2747 74 9.8846 188 1.0079
1012 1 48.5352 0.9159 G 1.3872 123.5352 122 20.1101 71 9.507891655 89.05298217 74.4778 75 9.3687 186 0.9159
1013 1 22.6571 0.4275 G 1.0862 96.6571 97 12.1877 70 9.44069767 88.98429883 73.8389 74 9.9895 186 0.4275
1014 1 12.1818 0.2299 L 0.9819 85.1818 87 10.6883 44 7.484820843 86.75553199 73.7582 73 9.1704 188 0.2299
1015 1 14779.2725 278.8875 G 154.2784 14859.2725 5013 16355.3828 235 17.29772568 96.31464838 79.8089 80 10.8764 233 278.8875
1016 1 25.2676 0.4768 G 1.0953 104.2676 101 13.2972 71 9.507891655 95.19493388 78.9278 79 10.7966 186 0.4768
1017 1 16.6458 0.3141 G 1.0169 92.6458 93 12.2721 48 7.817640305 91.10413932 75.8667 76 10.0694 186 0.3141
1018 1 19.5926 0.3697 G 1.0609 96.5926 100 14.242 54 8.291859627 91.04971647 76.4111 77 9.3665 186 0.3697
1019 1 6.0337 0.1139 L 0.9127 83.0337 83 13.1444 89 10.64510822 90.97148317 77.0392 77 9.3143 159 0.1139
1020 1 -14.0741 -0.2656 L 0.6543 76.9259 75 13.418 81 10.15541267 117.5715704 90.8723 91 17.7144 145 -0.2656

Total number of rows: 54359

Table truncated, full table size 5806 Kbytes.




Supplementary file Size Download File type/resource
GSM82354.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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