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Sample GSM82351 Query DataSets for GSM82351
Status Public on Apr 30, 2007
Title 1250_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13842.7842 179.0151 G 140.7645 13924.7842 5976 14450.0234 187 15.43035316 98.92252707 82.4167 82 11.2817 124 179.0151
1002 1 1126.4298 14.567 G 12.7598 1205.4298 1338 695.5376 116 12.15301514 94.47115605 79.2241 79 10.3141 120 14.567
1003 1 8.1667 0.1056 L 0.8959 89.1667 90 10.27 30 6.18038702 99.53232683 82.1111 81 12.3549 186 0.1056
1004 1 13.1538 0.1701 L 0.9715 92.1538 91 14.2943 91 10.76405144 94.85301548 79.4336 79 10.5687 234 0.1701
1005 1 7.6429 0.0988 L 0.9002 85.6429 85 13.523 56 8.444016457 95.13788719 78.5641 78 11.4253 121 0.0988
1006 1 14.2826 0.1847 G 1.0065 92.2826 93 14.2014 46 7.653039932 91.68761081 78.0722 78 9.1251 186 0.1847
1007 1 21.6964 0.2806 G 1.0537 100.6964 99 16.748 56 8.444016457 95.56694506 79.3846 79 11.0446 188 0.2806
1008 1 13536.0479 175.0484 G 139.8792 13617.0479 5261 14524.4414 190 15.55363369 97.34865999 81.5045 81 10.8991 230 175.0484
1009 1 232.4886 3.0065 G 3.2093 314.4886 328 100.0657 88 10.58513451 97.99230495 82.0506 82 10.6615 164 3.0065
1010 1 1271.3204 16.4407 G 14.4929 1349.3204 1545 803.8483 105 11.56244564 93.10196203 78.0658 78 10.068 158 16.4407
1011 1 64 0.8276 G 1.5036 142 141 23.907 75 9.772049904 94.43964367 78.8485 78 10.9598 171 0.8276
1012 1 50.1159 0.6481 G 1.3372 128.1159 127 19.8286 69 9.373021126 95.81110123 79.5604 78 11.8741 188 0.6481
1013 1 34.4324 0.4453 G 1.2127 112.4324 109 14.6943 74 9.706685066 92.71273326 78.8626 78 9.8085 188 0.4453
1014 1 13.5278 0.1749 L 0.984 92.5278 95 13.4753 36 6.770275116 94.03473066 78.1758 79 10.0232 188 0.1749
1015 1 15192.5508 196.4703 G 153.5638 15275.5508 6360 15837.6074 222 16.81247139 99.47363612 82.5728 83 10.9824 214 196.4703
1016 1 91.1321 1.1785 G 1.7761 172.1321 179 35.9232 108 11.72646046 96.91606937 81.5909 81 10.6107 114 1.1785
1017 1 13.2429 0.1713 L 0.9743 95.2429 97 13.296 70 9.44069767 97.75416526 82.3417 82 10.5028 124 0.1713
1018 1 8.35 0.108 L 0.9216 94.35 85 21.5134 40 7.136496544 102.3719125 85.6961 86 10.9146 187 0.108
1019 1 20.1333 0.2604 G 1.0441 102.1333 105 13.3992 45 7.569397449 97.81773397 83.1278 82 10.5452 186 0.2604
1020 1 21.8615 0.2827 L 0.9591 113.8615 115 17.3124 65 9.097283363 118.7215991 95.4369 92 17.8144 107 0.2827

Total number of rows: 54359

Table truncated, full table size 5848 Kbytes.




Supplementary file Size Download File type/resource
GSM82351.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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