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Sample GSM82337 Query DataSets for GSM82337
Status Public on Apr 30, 2007
Title 1844_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15439.6084 155.6823 G 156.4531 15520.6084 9115 15562.4219 173 14.84151077 99.20295897 83.3667 81 12.1353 124 155.6823
1002 1 1498.699 15.1118 G 15.8767 1578.699 1828 858.2123 105 11.56244564 99.43516308 80.8722 80 12.9568 186 15.1118
1003 1 2.4857 0.0251 L 0.8262 83.4857 84 18.1413 35 6.675580978 101.0533558 80.85 81 13.3689 186 0.0251
1004 1 16.4419 0.1658 L 0.9977 96.4419 92 17.7362 43 7.39927721 96.660042 79.45 80 11.1067 186 0.1658
1005 1 10.5897 0.1068 L 0.9175 86.5897 90 13.3257 39 7.04672575 94.38044418 77.0939 76 12.2536 187 0.1068
1006 1 18.7174 0.1887 G 1.0349 94.7174 96 12.388 46 7.653039932 91.52432151 76.2907 76 10.3495 178 0.1887
1007 1 38.1857 0.385 G 1.2253 115.1857 95 92.991 70 9.44069767 94.00528591 77.775 77 11.3369 124 0.385
1008 1 14746.6426 148.695 G 144.9423 14829.6426 6939 15378.6387 181 15.18078899 102.3140957 84.5833 83 12.8761 124 148.695
1009 1 490.3295 4.9441 G 5.8295 571.3295 607 235.9254 88 10.58513451 98.00590048 81.3722 81 11.3373 186 4.9441
1010 1 935.9368 9.4373 G 10.6187 1013.9368 1135 527.8078 95 10.9980793 95.48628319 78.0934 78 11.6575 188 9.4373
1011 1 103.2683 1.0413 G 1.9271 181.2683 183 37.9473 82 10.21790791 94.06507625 78.0604 78 10.71 188 1.0413
1012 1 89.4026 0.9015 G 1.7776 169.4026 167 37.4139 77 9.90148735 95.29717493 79.1429 80 10.1981 188 0.9015
1013 1 46.0139 0.464 G 1.2863 126.0139 120 34.794 72 9.574614525 97.96682877 80.6484 80 11.9779 188 0.464
1014 1 14.2 0.1432 L 0.9297 94.2 95 15.3821 40 7.136496544 101.3224112 81.9176 80 14.2149 188 0.1432
1015 1 15120.6426 152.4661 G 147.5304 15205.6426 5957 15938.5176 222 16.81247139 103.0678842 85.5695 85 12.0453 231 152.4661
1016 1 39.3043 0.3963 G 1.1978 123.3043 120 22.3894 69 9.373021126 102.9441782 83.05 84 12.6295 186 0.3963
1017 1 16.3974 0.1653 L 0.9873 98.3974 100 19.8819 78 9.965575218 99.65821075 82.9083 82 11.7721 124 0.1653
1018 1 -0.5161 -0.0052 L 0.7979 85.4839 85 13.7181 31 6.282549381 107.1415752 86.4451 86 14.0944 179 -0.0052
1019 1 13.7568 0.1387 L 0.9254 100.7568 96 23.1206 37 6.86366272 108.8735175 88.1105 87 14.5823 178 0.1387
1020 1 75.8649 0.765 C 1.2205 191.8649 176 64.7428 74 9.706685066 157.2006464 114.9384 116 27.4671 152 0.765

Total number of rows: 54359

Table truncated, full table size 5864 Kbytes.




Supplementary file Size Download File type/resource
GSM82337.TXT.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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