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Sample GSM82331 Query DataSets for GSM82331
Status Public on Apr 30, 2007
Title 380_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 18509.4121 269.9713 G 178.9713 18592.4121 8006 19750.7227 145 13.58748436 103.8848549 84.2917 83 13.9232 124 269.9713
1002 1 889.4318 12.9729 G 9.072 972.4318 1068 455.058 88 10.58513451 107.1907325 85.8605 83 16.1272 178 12.9729
1003 1 8.9286 0.1302 L 0.8382 93.9286 85 29.2427 84 10.34176636 112.0533603 87.1842 85 18.0356 236 0.1302
1004 1 7.8056 0.1138 L 0.8881 90.8056 89 14.5351 36 6.770275116 102.2446392 83.9195 83 12.8298 180 0.1138
1005 1 2.6 0.0379 L 0.8455 83.6 82 14.9534 85 10.40314198 98.87629903 81.0186 81 11.9175 223 0.0379
1006 1 14.6129 0.2131 L 0.8766 97.6129 96 14.7597 31 6.282549381 111.3532735 86.7197 83 18.9022 136 0.2131
1007 1 36.4068 0.531 G 1.1745 119.4068 113 30.2689 59 8.667244911 101.6689203 83.5193 83 12.4459 187 0.531
1008 1 18433.9238 268.8702 G 181.7399 18516.9238 6155 20507.4727 161 14.31752682 101.8869492 84.2941 83 12.5913 106 268.8702
1009 1 59.6154 0.8695 G 1.0459 144.6154 148 47.6717 39 7.04672575 138.2693056 94.6107 85 35.5129 155 0.8695
1010 1 448.2143 6.5375 G 5.5504 526.2143 616 244.4364 84 10.34176636 94.80650836 78.9176 78 11.2043 188 6.5375
1011 1 100.8481 1.4709 G 1.8661 180.8481 182 44.5424 79 10.02925301 96.91446818 79.8457 80 11.2763 168 1.4709
1012 1 47.0147 0.6857 G 1.3122 126.0147 122 21.3566 68 9.304853439 96.03335323 79.7198 79 11.3556 188 0.6857
1013 1 35.2909 0.5147 G 1.14 116.2909 116 14.3599 55 8.368284225 102.0064984 81.4121 81 14.0043 188 0.5147
1014 1 9.1724 0.1338 L 0.901 89.1724 84 26.5038 58 8.59348011 98.97012006 80.9915 80 12.6467 121 0.1338
1015 1 21793.6133 317.8734 G 202.0581 21880.6133 10864 22423.1367 162 14.36192226 108.288702 87.875 87 14.1925 124 317.8734
1016 1 15.5806 0.2273 L 0.8779 97.5806 94 13.7788 31 6.282549381 111.1548564 85.0787 82 19.4366 184 0.2273
1017 1 1.5 0.0219 L 0.8535 81.5 80 11.3277 30 6.18038702 95.4888679 80.2414 80 10.3259 151 0.0219
1018 1 24.3256 0.3548 G 1.0715 105.3256 90 49.7219 43 7.39927721 98.29970397 81.15 81 11.5331 144 0.3548
1019 1 -2.9655 -0.0433 L 0.7991 79.0345 77 11.4635 29 6.076507568 98.90983522 81.7022 82 11.2732 184 -0.0433
1020 1 39.2909 0.5731 G 1.1577 125.2909 117 41.8776 55 8.368284225 108.2206708 87.7088 86 14.8138 188 0.5731

Total number of rows: 54359

Table truncated, full table size 5841 Kbytes.




Supplementary file Size Download File type/resource
GSM82331.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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