|
Status |
Public on Mar 18, 2024 |
Title |
iWAT, vehicle treated group , Cold 7days, rep3 |
Sample type |
SRA |
|
|
Source name |
inguinal white adipose tissue
|
Organism |
Mus musculus |
Characteristics |
tissue: inguinal white adipose tissue treatment: Vehicle upon cold exposure
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was harvested using Trizol kit (Ambion). 1.3 ug of total RNA was used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared by Novogene company (China).
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
Veh_4
|
Data processing |
Data Quality Control: filtering reads containing adapter or with low quality: Pastp Mapping Reads to Reference Genome : HISAT2 Gene Expression Quantification : Feature Counts Assembly: mm10 Supplementary files format and content: tab-delimited text file includes raw counts for each Sample
|
|
|
Submission date |
Mar 13, 2024 |
Last update date |
Mar 18, 2024 |
Contact name |
Jooman Park |
E-mail(s) |
joomanp@uic.edu
|
Organization name |
University of Illinois at Chicago
|
Department |
Dept. of Physiology and Biophysics
|
Lab |
Jiang Yuwei
|
Street address |
909 S Wolcott Ave COMRB 1120
|
City |
Chicago |
State/province |
IL |
ZIP/Postal code |
60612 |
Country |
USA |
|
|
Platform ID |
GPL24247 |
Series (1) |
GSE261481 |
Effect of estrogen on transcriptomic profile in iWAT of old aged mice |
|
Relations |
BioSample |
SAMN40436130 |
SRA |
SRX23938177 |