|
| Status |
Public on Feb 27, 2024 |
| Title |
Control ChIP-seq from K562 (ENCLB885FXQ) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ELF4
|
| Organism |
Homo sapiens |
| Characteristics |
line: K562
biomaterial_type: cell line
biosample encode accession: ENCBS802FVB (SAMN40088287)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS802FVB
note: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ELF4.
Sex: female
health state: chronic myelogenous leukemia (CML)
dev stage: adult
age: 53 year
donor_id: ENCDO000AAD
lab: Michael Snyder, Stanford
source: Kevin White
link: ENCBS802FVB at ENCODE; https://www.encodeproject.org/ENCBS802FVB/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/65416bfd-f0b4-44f8-b000-d644643df934/@@download/attachment/ENCODE4_Snyder_ChIP-seq_BiorupterBravoTruSeqProtocol_v1.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR099EPT/
***************
biological replicate number: 1
technical replicate number: 1
description: K562 immortalized cell line stably expressing C-terminal eGFP-ELF4 fusion protein.
experiment encode accession: ENCSR099EPT
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-07-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB885FXQ
size range: 450-650
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Feb 24, 2024 |
| Last update date |
Feb 27, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE257399 |
Control ChIP-seq from K562 (ENCSR099EPT) |
|
| Relations |
| BioSample |
SAMN40088287 |
