|
| Status |
Public on Aug 27, 2024 |
| Title |
kabanos, batch C, rep 4 |
| Sample type |
SRA |
| |
|
| Source name |
kabanos
|
| Organism |
food metagenome |
| Characteristics |
tissue: kabanos
group: final product
|
| Treatment protocol |
rinsing in ringer solution and then extraction
|
| Growth protocol |
from pastrami plant
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
MagMAXTMCORENucleic Acid Purification Kit
The 16S libraries were constructed simultaneously according to Illumina 16S Metagenomic Sequencing Library Preparation using primers amplifying the 16S V3 and V4 region located at positions 341 bp and 805 bp
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina MiSeq |
| |
|
| Description |
table_figure_1.qzv
taxa-bar-plots_figure_1.qzv
figure_1_quantified_microorganisms.csv
|
| Data processing |
we used Qiime2 to analyze data
Assembly: 16s
Supplementary files format and content: table.qzv
Supplementary files format and content: taxa-bar-plots.qzv
Library strategy: 16S DNA metagenome
|
| |
|
| Submission date |
Feb 07, 2024 |
| Last update date |
Aug 27, 2024 |
| Contact name |
May Cohen Hakmon |
| Organization name |
Technion
|
| Street address |
Shikago
|
| City |
Haifa |
| ZIP/Postal code |
3200005 |
| Country |
Israel |
| |
|
| Platform ID |
GPL34170 |
| Series (1) |
| GSE255249 |
Early detection of food safety and spoilage incidents based on live microbiome profiling and qPCR-based monitoring of indicators |
|
| Relations |
| BioSample |
SAMN39854828 |
| SRA |
SRX23560202 |
