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Sample GSM801805 Query DataSets for GSM801805
Status Public on Feb 20, 2012
Title Breast Tissues BC-3613
Sample type genomic
 
Source name genomic DNA from breast tissues BC-3613
Organism Homo sapiens
Characteristics sample type: bisulphite converted genomic DNA from breast tissues
status(0=healthy,1=cancer): 1
sentrixpos: C
beadchipid: 9
age: 72.15
bsc: 11.7149939771089
dataid: 3613
er(0=negative,1=positive): 1
Stage: 2
grade: 2
histology(1=invasive ductal(idc),2=invasive lobular(ilc),3=mucinous or medullary,4=others): 1
overallsurvival(0=alive,1=dead): 0
ostime: 111.42
relapse: 0
rstime: 108.95
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from breast tissue samples using the Qiagen DNeasy Blood and Tissue kit (Qiagen Ltd, UK)
Label Biotin
Label protocol Standard Illumina Protocol for Infinium 27k Chip
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner settings
Description Breast tissue samples were drawn from 114 breast cancers and 23 non-neoplastic breast tissues.
Data processing BeadStudio software v3.2
 
Submission date Sep 26, 2011
Last update date Feb 20, 2012
Contact name Joanna Zhuang
Organization name UCL
Street address 74 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platform ID GPL8490
Series (1)
GSE32393 Epigenome analysis of breast tissue from women with and without breast cancer.

Data table header descriptions
ID_REF IlmnID
VALUE M/(U+M+100)

Data table
ID_REF VALUE
cg00000292 0.7329131
cg00002426 0.2546833
cg00003994 0.2501189
cg00005847 0.5935721
cg00006414 0.1312256
cg00007981 0.0621118
cg00008493 0.9406173
cg00008713 0.03656491
cg00009407 0.03132607
cg00010193 0.5833735
cg00011459 0.7832723
cg00012199 0.0397432
cg00012386 0.02665675
cg00012792 0.02208371
cg00013618 0.7733046
cg00014085 0.04976428
cg00014837 0.7284041
cg00015770 0.5728191
cg00016968 0.4893262
cg00019495 0.1692244

Total number of rows: 27578

Table truncated, full table size 573 Kbytes.




Supplementary file Size Download File type/resource
GSM801805_BC-3613_Raw.txt.gz 438.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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