|
| Status |
Public on Feb 20, 2012 |
| Title |
Breast Tissues BC-3424 |
| Sample type |
genomic |
| |
|
| Source name |
genomic DNA from breast tissues BC-3424
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: bisulphite converted genomic DNA from breast tissues
status(0=healthy,1=cancer): 1
sentrixpos: B
beadchipid: 9
age: 47.49
bsc: 10.8358702970618
dataid: 3424
er(0=negative,1=positive): 0
Stage: 3
grade: 2
histology(1=invasive ductal(idc),2=invasive lobular(ilc),3=mucinous or medullary,4=others): 1
overallsurvival(0=alive,1=dead): 1
ostime: 49.12
relapse: 1
rstime: 23.74
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from breast tissue samples using the Qiagen DNeasy Blood and Tissue kit (Qiagen Ltd, UK)
|
| Label |
Biotin
|
| Label protocol |
Standard Illumina Protocol for Infinium 27k Chip
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner settings
|
| Description |
Breast tissue samples were drawn from 114 breast cancers and 23 non-neoplastic breast tissues.
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Sep 26, 2011 |
| Last update date |
Feb 20, 2012 |
| Contact name |
Joanna Zhuang |
| Organization name |
UCL
|
| Street address |
74 Huntley Street
|
| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE32393 |
Epigenome analysis of breast tissue from women with and without breast cancer. |
|
