|
| Status |
Public on Feb 01, 2012 |
| Title |
Normal Breast Sample ATM_28 |
| Sample type |
genomic |
| |
|
| Source name |
Human female breast tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Human breast tissue
disease status: healthy control
gender: Female
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA from normal breast samples was extracted using a conventional SDS/proteinase K/phenol method
|
| Label |
biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
Standard Affymetrix hybridization protocol
|
| Scan protocol |
Standard Affymetrix scanning protocol
|
| Description |
A791-28.CEL
Human female breast tissue hybridised onto Genome-Wide Human SNP Array 6.0
|
| Data processing |
The Affymetrix SNP 6.0 arrays data was pre-processed and analysed using the crlmm Bioconductor package (http://www.bioconductor.org/help/biocviews/release/bioc/html/crlmm.html) [Carvalho B, et al. Biostatistics 2007, 8:485-499] implemented in the R statistical programming language [Team RDC: R: A Language and Environment for Statistical Computing. 2010].
|
| |
|
| Submission date |
Sep 20, 2011 |
| Last update date |
Feb 01, 2012 |
| Contact name |
Ana Teresa Maia |
| Organization name |
University of Cambridge
|
| Department |
Department of Oncology
|
| Lab |
Cambridge Research Institute
|
| Street address |
Robinson Way
|
| City |
Cambridge |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB2 0RE |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE32258 |
Effects of BRCA2 cis-regulation in normal breast and cancer risk amongst BRCA2 mutation carriers [SNP data] |
| GSE32259 |
Effects of BRCA2 cis-regulation in normal breast and cancer risk amongst BRCA2 mutation carriers |
|
