|
| Status |
Public on Sep 20, 2011 |
| Title |
Yale_ChipSeq_CH12_H3K4me3_IgG-Yale |
| Sample type |
SRA |
| |
|
| Source name |
CH12
|
| Organism |
Mus musculus |
| Characteristics |
lab: Yale-m
lab description: Weissman - Yale University
datatype: ChipSeq
datatype description: ChIP-Seq
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-Yale
control description: Input signal from Mouse IgG ChIP-seq prepared at Yale
age: immortalized
age description: Immortal cells
control: IgG-Yale
control description: Input signal from Mouse IgG ChIP-seq prepared at Yale
controlid: CH12/None/Input/IgG-Yale
replicate: 1
replicate description: tier 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
|
| Biomaterial provider |
Weissman lab
|
| Treatment protocol |
None
|
| Growth protocol |
CH12_Weissman_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
| |
|
| Submission date |
Sep 19, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (3) |
| GSE32218 |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX097686 |
| BioSample |
SAMN00722062 |
| Named Annotation |
GSM798327_mm9_wgEncodeSydhHistCh12H3k4me3IggyaleSig.bigWig |
