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Sample GSM798327 Query DataSets for GSM798327
Status Public on Sep 20, 2011
Title Yale_ChipSeq_CH12_H3K4me3_IgG-Yale
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: Yale-m
lab description: Weissman - Yale University
datatype: ChipSeq
datatype description: ChIP-Seq
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-Yale
control description: Input signal from Mouse IgG ChIP-seq prepared at Yale
age: immortalized
age description: Immortal cells
control: IgG-Yale
control description: Input signal from Mouse IgG ChIP-seq prepared at Yale
controlid: CH12/None/Input/IgG-Yale
replicate: 1
replicate description: tier 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Treatment protocol None
Growth protocol CH12_Weissman_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Sep 19, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE32218 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX097686
BioSample SAMN00722062
Named Annotation GSM798327_mm9_wgEncodeSydhHistCh12H3k4me3IggyaleSig.bigWig

Supplementary file Size Download File type/resource
GSM798327_mm9_wgEncodeSydhHistCh12H3k4me3IggyalePk.narrowPeak.gz 435.1 Kb (ftp)(http) NARROWPEAK
GSM798327_mm9_wgEncodeSydhHistCh12H3k4me3IggyaleSig.bigWig 217.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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