|
| Status |
Public on Aug 12, 2011 |
| Title |
UChicago_ChipSeq_K562_eGFP-HDAC8_Control_eGFP-HDAC8 |
| Sample type |
SRA |
| |
|
| Source name |
K562
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UChicago
lab description: White - University of Chicago
data type: ChipSeq
data type description: ChIP-Seq
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
antibody: eGFP-HDAC8
antibody antibody description: Goat polyclonal
antibody target description: HDAC8
antibody vendor name: Kevin White
antibody vendor id: (None)
control: Control_eGFP-HDAC8
control description: This data represents a control being compared to experiments using antibody eGFP-HDAC8
control: Control_eGFP-HDAC8
control description: This data represents a control being compared to experiments using antibody eGFP-HDAC8
control id: K562/Input/Control_eGFP-HDAC8
replicate: 1
replicate description: tier 1
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
K562_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUchicagoTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUchicagoTfbs
|
| |
|
| Submission date |
Aug 12, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (2) |
| GSE31363 |
Transcription Factor Binding Sites by Epitope-Tag ChIP-seq from ENCODE/University of Chicago |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX092302 |
| BioSample |
SAMN00710316 |
| Named Annotation |
GSM777640_wgEncodeUchicagoTfbsK562Ehdac8ControlSig.bigWig |
