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| Status |
Public on Sep 02, 2023 |
| Title |
MDCKII_CGN-KO_1G8_N2 |
| Sample type |
SRA |
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| Source name |
Kidney
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| Organism |
Canis lupus familiaris |
| Characteristics |
tissue: Kidney
cell line: MDCKII
cell type: Epithelial
genotype: CGN-KO
treatment: No
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA libraries for RNA-seq were prepared using Illumina TruSeq HT kit following manufacturer's protocols.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
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| Data processing |
Sequenced reads were aligned to the NCBI canis lupus familiaris canFam3.1 genome with STAR v. 2.7.0f.
The reads counts were prepared with HTSeq count v.0.9.1
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Assembly: canFam3.1
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| Submission date |
Sep 01, 2023 |
| Last update date |
Sep 02, 2023 |
| Contact name |
Natacha Civic |
| E-mail(s) |
natacha.civic@unige.ch
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| Organization name |
University of Geneva
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| Department |
iGE3 Genomics Platform
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| Lab |
University of Geneva
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| Street address |
Rue Michel-Servet 1
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| City |
Geneva |
| ZIP/Postal code |
1211-4 |
| Country |
Switzerland |
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| Platform ID |
GPL24229 |
| Series (1) |
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| Relations |
| BioSample |
SAMN37235556 |
| SRA |
SRX21600743 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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