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GEO accession:
Sample GSM77217
Query DataSets for GSM77217
Status
Public on Nov 02, 2005
Title
scrambled antagomir122 (mm-antagomir122)
Sample type
RNA
Source name
liver
Organism
Mus musculus
Characteristics
C57Bl6
Extracted molecule
total RNA
Extraction protocol
total RNA from 3 livers were combined
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
mice were treated with 3x 80mg/KG bodyweight/day mm-antagomir122
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Oct 07, 2005
Last update date
Aug 28, 2018
Contact name
Markus Stoffel
E-mail(s)
stoffel@rockefeller.edu
Phone
212-327-8797
Fax
212-327-7997
Organization name
Rockefeller University
Department
Laboratory of Metabolic Diseases
Street address
1230 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL1261
Series (1)
GSE3425
Silencing of microRNAs in vivo with "antagomirs"
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
441.6
P
0.000754
AFFX-BioB-M_at
719.2
P
0.000662
AFFX-BioB-3_at
372.3
P
0.000581
AFFX-BioC-5_at
1411.3
P
0.000052
AFFX-BioC-3_at
1780.6
P
0.000044
AFFX-BioDn-5_at
2276.9
P
0.000044
AFFX-BioDn-3_at
5841.5
P
0.00011
AFFX-CreX-5_at
15114.4
P
0.000052
AFFX-CreX-3_at
18074.3
P
0.000044
AFFX-DapX-5_at
28.2
A
0.382599
AFFX-DapX-M_at
41.8
A
0.300606
AFFX-DapX-3_at
27.7
A
0.699394
AFFX-LysX-5_at
23.2
A
0.185131
AFFX-LysX-M_at
39.9
A
0.659339
AFFX-LysX-3_at
35.9
P
0.046467
AFFX-PheX-5_at
5.6
A
0.737173
AFFX-PheX-M_at
1.1
A
0.995002
AFFX-PheX-3_at
26.7
A
0.737173
AFFX-ThrX-5_at
50.3
A
0.440646
AFFX-ThrX-M_at
10.2
A
0.60308
Total number of rows:
45101
Table truncated, full table size
1220 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM77217.CEL.gz
6.5 Mb
(ftp)
(http)
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