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Sample GSM76991

Query DataSets for GSM76991

Status

Public on May 01, 2006

Title

mouselung_scid_8DPI_rep02

Sample type

RNA

Source name

whole lung

Organism

Mus musculus

Characteristics

strain:BALB/c scid, gender:male, age:8wks, tissue: whole lung, condition: 8DPI

Extracted molecule

total RNA

Extraction protocol

trizol extraction followed by qiagen RNeasy total RNA cleanup protocol

Label

biotin

Label protocol

standard Affymetrix procedures

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures using affy GCS3000

Description

Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Oct 04, 2005

Last update date

Aug 28, 2018

Contact name

Joshua J Reece

E-mail(s)

josh.reece@gmail.com

Organization name

Johns Hopkins University BSPH

Department

MMI

Lab

Lab of Alan Scott

Street address

615 N. Wolfe Street

City

Baltimore

State/province

ZIP/Postal code

21205

Country

USA

Platform ID

GPL1261

Series (1)

GSE3414

Immune Response to Nippostrongylus brasiliensis in the mouse lung

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF	VALUE	ABS_CALL
AFFX-BioB-5_at	429.2	P
AFFX-BioB-M_at	988.8	P
AFFX-BioB-3_at	391.5	P
AFFX-BioC-5_at	1681.6	P
AFFX-BioC-3_at	1497.1	P
AFFX-BioDn-5_at	2021.1	P
AFFX-BioDn-3_at	8475.5	P
AFFX-CreX-5_at	30990.4	P
AFFX-CreX-3_at	34799.8	P
AFFX-DapX-5_at	9.6	A
AFFX-DapX-M_at	30	A
AFFX-DapX-3_at	3.5	A
AFFX-LysX-5_at	30.9	A
AFFX-LysX-M_at	33.7	A
AFFX-LysX-3_at	56	P
AFFX-PheX-5_at	7.8	A
AFFX-PheX-M_at	1.6	A
AFFX-PheX-3_at	94.9	A
AFFX-ThrX-5_at	7.6	A
AFFX-ThrX-M_at	1.8	A

Total number of rows: 45101

Table truncated, full table size 832 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM76991.CEL.gz	5.9 Mb	(ftp)(http)	CEL