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Sample GSM76970 Query DataSets for GSM76970
Status Public on May 01, 2006
Title mouselung_wt_2DPI_rep02
Sample type RNA
 
Source name whole lung
Organism Mus musculus
Characteristics strain:BALB/c WT, gender:male, age:8wks, tissue: whole lung, condition: 2DPI
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Oct 04, 2005
Last update date Aug 28, 2018
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE3414 Immune Response to Nippostrongylus brasiliensis in the mouse lung
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 705.2 P
AFFX-BioB-M_at 1457.7 P
AFFX-BioB-3_at 678.2 P
AFFX-BioC-5_at 2164.2 P
AFFX-BioC-3_at 1901.6 P
AFFX-BioDn-5_at 2299.2 P
AFFX-BioDn-3_at 10338.8 P
AFFX-CreX-5_at 30081.4 P
AFFX-CreX-3_at 34437.7 P
AFFX-DapX-5_at 36.8 A
AFFX-DapX-M_at 22.4 A
AFFX-DapX-3_at 8.7 A
AFFX-LysX-5_at 18.4 A
AFFX-LysX-M_at 9.4 A
AFFX-LysX-3_at 20.8 A
AFFX-PheX-5_at 4.1 A
AFFX-PheX-M_at 2 A
AFFX-PheX-3_at 62.6 A
AFFX-ThrX-5_at 4.7 A
AFFX-ThrX-M_at 20.2 A

Total number of rows: 45101

Table truncated, full table size 832 Kbytes.




Supplementary file Size Download File type/resource
GSM76970.CEL.gz 5.9 Mb (ftp)(http) CEL

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