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Sample GSM7605528 Query DataSets for GSM7605528
Status Public on Nov 09, 2023
Title Infant 34 day 30
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S34
age: 0.2
tissue: Whole blood
time point: day 30
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998818003_A
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 13 0.06103896
ILMN_2055271 17.48 0.03636364
ILMN_1736007 0.18 0.4753247
ILMN_2383229 0.3 0.4688312
ILMN_1806310 2.51 0.3311688
ILMN_1779670 -7.14 0.9038961
ILMN_1653355 3.74 0.2766234
ILMN_1717783 -2.06 0.6246753
ILMN_1705025 -0.2 0.4935065
ILMN_1814316 -0.7 0.5376623
ILMN_2359168 -5.91 0.8532467
ILMN_1731507 -6.38 0.8714285
ILMN_1787689 -3.27 0.6961039
ILMN_3241953 33.61 0.005194805
ILMN_1745607 6.08 0.1844156
ILMN_2136495 -0.82 0.5493507
ILMN_1668111 9.14 0.112987
ILMN_2295559 -13.74 0.9961039
ILMN_1735045 -1.77 0.6051948
ILMN_1680754 10.47 0.08831169

Total number of rows: 47323

Table truncated, full table size 1301 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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