NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM7605525 Query DataSets for GSM7605525
Status Public on Nov 09, 2023
Title Infant 25 day 30
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S25
age: 0.2
tissue: Whole blood
time point: day 30
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998818012_D
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 1.34 0.3558442
ILMN_2055271 16.81 0.01428571
ILMN_1736007 0.6 0.4168831
ILMN_2383229 -2.26 0.6
ILMN_1806310 2.08 0.3103896
ILMN_1779670 -10.6 0.9649351
ILMN_1653355 -2.2 0.5974026
ILMN_1717783 -5.24 0.7961039
ILMN_1705025 -0.83 0.5116883
ILMN_1814316 -2.55 0.612987
ILMN_2359168 -5.95 0.8207792
ILMN_1731507 -2.99 0.6415585
ILMN_1787689 3.18 0.2402597
ILMN_3241953 32.58 0
ILMN_1745607 -2.94 0.638961
ILMN_2136495 -0.02 0.4558442
ILMN_1668111 -1.29 0.5402597
ILMN_2295559 -1.2 0.5324675
ILMN_1735045 -3.2 0.6597403
ILMN_1680754 7.67 0.09220779

Total number of rows: 47323

Table truncated, full table size 1240 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap