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Sample GSM7605523 Query DataSets for GSM7605523
Status Public on Nov 09, 2023
Title Infant 21 day 30
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S21
age: 0.3
tissue: Whole blood
time point: day 30
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998734105_C
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -3.8 0.7038961
ILMN_2055271 15.63 0.02467532
ILMN_1736007 -7.92 0.9116883
ILMN_2383229 2 0.3350649
ILMN_1806310 5.59 0.1779221
ILMN_1779670 1.08 0.3948052
ILMN_1653355 7.48 0.1207792
ILMN_1717783 -10.41 0.9649351
ILMN_1705025 -5.83 0.8272727
ILMN_1814316 2.41 0.3194805
ILMN_2359168 -2.98 0.6467533
ILMN_1731507 -5.82 0.825974
ILMN_1787689 6.03 0.1636364
ILMN_3241953 28.38 0.001298701
ILMN_1745607 -5.34 0.8012987
ILMN_2136495 -4.57 0.7584416
ILMN_1668111 -0.79 0.4857143
ILMN_2295559 -2.72 0.6246753
ILMN_1735045 0.7 0.4116883
ILMN_1680754 20.06 0.01038961

Total number of rows: 47323

Table truncated, full table size 1259 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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