NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM7605521 Query DataSets for GSM7605521
Status Public on Nov 09, 2023
Title Infant 19 day 30
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S19
age: 0.3
tissue: Whole blood
time point: day 30
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998734083_B
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 13.22 0.03246753
ILMN_2055271 11.11 0.05064935
ILMN_1736007 -1.04 0.5376623
ILMN_2383229 0.09 0.4493507
ILMN_1806310 0.63 0.4168831
ILMN_1779670 -9.39 0.9493507
ILMN_1653355 8.63 0.08961039
ILMN_1717783 -4.9 0.7714286
ILMN_1705025 -1.11 0.5415584
ILMN_1814316 3.75 0.2545455
ILMN_2359168 -6.57 0.8506494
ILMN_1731507 -8.74 0.9272727
ILMN_1787689 -6.5 0.848052
ILMN_3241953 25.18 0.003896104
ILMN_1745607 0.23 0.4376623
ILMN_2136495 -6.58 0.8506494
ILMN_1668111 5.81 0.1623377
ILMN_2295559 -4.44 0.7519481
ILMN_1735045 -11.82 0.9844156
ILMN_1680754 18.92 0.01168831

Total number of rows: 47323

Table truncated, full table size 1253 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap