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Sample GSM7605513 Query DataSets for GSM7605513
Status Public on Nov 09, 2023
Title Infant 5 day 30
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S5
age: 0.3
tissue: Whole blood
time point: day 30
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998734104_C
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 5.15 0.1818182
ILMN_2055271 8.63 0.07532468
ILMN_1736007 6.33 0.125974
ILMN_2383229 2.03 0.3376623
ILMN_1806310 -0.76 0.5220779
ILMN_1779670 -0.76 0.5220779
ILMN_1653355 13.93 0.02597403
ILMN_1717783 -7.88 0.8974026
ILMN_1705025 0.6 0.4220779
ILMN_1814316 0.12 0.4649351
ILMN_2359168 -0.72 0.5220779
ILMN_1731507 -10.21 0.9610389
ILMN_1787689 8.99 0.07402597
ILMN_3241953 21.95 0.003896104
ILMN_1745607 -1.86 0.5935065
ILMN_2136495 -6.28 0.8350649
ILMN_1668111 -2.52 0.635065
ILMN_2295559 -4.74 0.7545455
ILMN_1735045 1.31 0.3766234
ILMN_1680754 7.1 0.1207792

Total number of rows: 47323

Table truncated, full table size 1229 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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