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Sample GSM7605505 Query DataSets for GSM7605505
Status Public on Nov 09, 2023
Title Infant 26 day 7
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S26
age: 0.1
tissue: Whole blood
time point: day 7
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998838003_I
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 7.91 0.09220779
ILMN_2055271 6.64 0.1272727
ILMN_1736007 2.76 0.2831169
ILMN_2383229 -3.23 0.6649351
ILMN_1806310 -7.2 0.8714285
ILMN_1779670 -0.23 0.4727273
ILMN_1653355 -2.06 0.6038961
ILMN_1717783 -2.34 0.6194805
ILMN_1705025 4.38 0.2038961
ILMN_1814316 3.17 0.2597403
ILMN_2359168 0.03 0.4623377
ILMN_1731507 -9.58 0.9376624
ILMN_1787689 -2.04 0.6038961
ILMN_3241953 22.51 0.002597403
ILMN_1745607 -2.68 0.6428571
ILMN_2136495 2.27 0.3103896
ILMN_1668111 -4.08 0.7090909
ILMN_2295559 -2.5 0.6402597
ILMN_1735045 -3.44 0.6701299
ILMN_1680754 19.06 0.005194805

Total number of rows: 47323

Table truncated, full table size 1230 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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