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Sample GSM7605498 Query DataSets for GSM7605498
Status Public on Nov 09, 2023
Title Infant 15 day 7
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S15
age: 0.2
tissue: Whole blood
time point: day 7
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998734079_C
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 4.76 0.2051948
ILMN_2055271 4.53 0.2181818
ILMN_1736007 0.24 0.4805195
ILMN_2383229 -2.78 0.6675324
ILMN_1806310 17.31 0.01428571
ILMN_1779670 0.29 0.4792208
ILMN_1653355 9.14 0.0961039
ILMN_1717783 -6.42 0.8584415
ILMN_1705025 5.16 0.1909091
ILMN_1814316 -2.21 0.6363636
ILMN_2359168 -6.94 0.8844156
ILMN_1731507 -8.48 0.9324675
ILMN_1787689 0.24 0.4805195
ILMN_3241953 39.65 0.001298701
ILMN_1745607 -6.6 0.8636364
ILMN_2136495 -8.31 0.9233766
ILMN_1668111 -1.07 0.5571429
ILMN_2295559 -5.16 0.7857143
ILMN_1735045 -5.84 0.8272727
ILMN_1680754 1.59 0.3818182

Total number of rows: 47323

Table truncated, full table size 1261 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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