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Sample GSM7605472 Query DataSets for GSM7605472
Status Public on Nov 09, 2023
Title Infant 13 day 0
Sample type RNA
 
Source name Human Whole blood
Organism Homo sapiens
Characteristics subject: S13
age: 0.2
tissue: Whole blood
time point: day 0
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Tempus Spin RNA Isolation Kit and globin mRNA from total RNA was removed with GLOBINclear Whole Blood Globin Reduction Kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 3998720024_E
Data processing The data were normalized using quantile normalization with lumi in R
 
Submission date Jul 13, 2023
Last update date Nov 09, 2023
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL10558
Series (1)
GSE237318 Blood gene expression profiles following vaccination in 2-month old infants

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -2.96 0.6844156
ILMN_2055271 11.28 0.08701298
ILMN_1736007 -2.52 0.6493506
ILMN_2383229 1.58 0.3883117
ILMN_1806310 14.6 0.05584415
ILMN_1779670 -0.43 0.5142857
ILMN_1653355 1 0.4311688
ILMN_1717783 -8.16 0.9298701
ILMN_1705025 2.04 0.3623376
ILMN_1814316 5.25 0.2142857
ILMN_2359168 -1.18 0.5792208
ILMN_1731507 -8.76 0.9441559
ILMN_1787689 3.58 0.2883117
ILMN_3241953 47.08 0
ILMN_1745607 -6.6 0.8779221
ILMN_2136495 0.14 0.4896104
ILMN_1668111 1.02 0.4298701
ILMN_2295559 9.65 0.1116883
ILMN_1735045 4.49 0.2467532
ILMN_1680754 12.72 0.06103896

Total number of rows: 47323

Table truncated, full table size 1238 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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