|
| Status |
Public on Jul 13, 2023 |
| Title |
T.001 |
| Sample type |
RNA |
| |
|
| Source name |
FFPE
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: tumor
Stage: T1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
AllPREP FFPE DNA/RNA kit (Qiagen) according to manufacturer's protocol
|
| Label |
fluorescence microscope
|
| Label protocol |
Sample RNA is hybridized with target-specific capture and reporter probes. This creates a library of unique target-probe complexes. Each target is labelled with a specific barcode, which can be detected and counted using an automated fluorescence microscope.
|
| |
|
| Hybridization protocol |
Samples were hybridized for 16 hours at 65C
|
| Scan protocol |
Detection and scanning were performed by the nCounter SPRINT Profiler analysis system.
|
| Data processing |
Detection and scanning were performed by the nCounter SPRINT Profiler analysis system.
|
| |
|
| Submission date |
Jul 13, 2023 |
| Last update date |
Jul 13, 2023 |
| Contact name |
Arezo Torang |
| E-mail(s) |
a.torang@amsterdamumc.nl
|
| Organization name |
Amsterdam UMC
|
| Street address |
Meibergdreef 9
|
| City |
Amsterdam |
| ZIP/Postal code |
1105 AZ |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL33581 |
| Series (2) |
| GSE237247 |
Consensus molecular subtype transition during progression of colorectal cancer [NanoClassifier Gene Set] |
| GSE237249 |
Consensus molecular subtype transition during progression of colorectal cancer |
|
