|
Status |
Public on Jul 24, 2023 |
Title |
Adipocyte + SKOV3ip1 co-culture [EL6] |
Sample type |
RNA |
|
|
Source name |
Adipose tissue
|
Organism |
Homo sapiens |
Characteristics |
tissue: Benign Tissue
|
Treatment protocol |
Cancer cells were co-cultured with primary human omental adipocytes at 1:3 (packed cell volume)
|
Growth protocol |
Cells were grown in DMEM:F12 media supplemented with 0.1% fatty acids-free bovine serum albumin, 100 U/ml penicillin, and 100 µg/ml streptomycin .
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated using RNeasy kit after in-column DNase digestion.
|
Label |
Biotin
|
Label protocol |
Biotinylated cRNA was generated using Illumina Total Prep RNA Amplification Kit
|
|
|
Hybridization protocol |
Direct Hybridization Assay
|
Scan protocol |
Arrays were scanned on an Illumina’s Bead Station 500GX Genetic Analysis System
|
Description |
Replicate 1 EL6
|
Data processing |
The raw data were processed by Illumina Genome Studio v2011.1 and Partek Genomics suite v6.6.
|
|
|
Submission date |
Jun 23, 2023 |
Last update date |
Jul 24, 2023 |
Contact name |
Abir Mukherjee |
E-mail(s) |
abirm@uchicago.edu
|
Organization name |
university of Chicago
|
Street address |
929 E 57th street, Gordon center for integrative sciences, room w107K
|
City |
Chicago |
State/province |
Illinois |
ZIP/Postal code |
60615 |
Country |
USA |
|
|
Platform ID |
GPL10558 |
Series (1) |
GSE235641 |
Bi-directional interactions of omental adipocytes and SKOV3ip1 cells |
|