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Status |
Public on Jan 17, 2024 |
Title |
R-2A ROR2 KD day14, biological rep3 |
Sample type |
RNA |
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Source name |
Human induced pluripotent stem cell
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Organism |
Homo sapiens |
Characteristics |
cell line: HiPS-RIKEN-2A cell type: Human induced pluripotent stem cell treatment: shROR2 treatment: hiPSC-derived neural progenitor cell day14
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Treatment protocol |
HiPSCs were differentiated into NPCs by using the STEMdiff SMADi Neural Induction Kit (Stem Cell Technologies), according to the manufacturer instructions. The cells were passaged every 7 days until day 21 post-differentiation.
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Growth protocol |
Undifferentiated hiPSCs were maintained on iMatrix-511 in StemFit AK02 medium.
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from the hiPSC-derived NPC cells using RNeasy Mini Kit (QIAGEN), according to the manufacturer instructions.
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Label |
Biotin
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Label protocol |
Labeling extracted total RNA was performed using the Gene ChipTM WT PLUS Reagent Kit (Thermo Fisher Scientific) according to manufacturer’s instructions.
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Hybridization protocol |
Hybridization was performed in a Gene Chip Hybridization Oven 645 for 16 h at 45 °C.
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Scan protocol |
Gene chips were scanned using the GeneChip Scanner 3000.
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Data processing |
Array-Quality Control was done using the Transcriptome Analysis Console (TAC) Software (version 4.0.3.14). Gene expression intensities were normalized and summarized with SST robust multiarray average algorithm (Affymetrix): SST-RMA.
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Submission date |
May 23, 2023 |
Last update date |
Jan 17, 2024 |
Contact name |
Takuya Kuroda |
E-mail(s) |
kuroda@nihs.go.jp
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Organization name |
National Institute of Health Sciences
|
Street address |
3-25-26 Tonomachi, Kawasaki Ward,
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City |
Kawasaki City |
State/province |
Kanagawa |
ZIP/Postal code |
210-9501 |
Country |
Japan |
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Platform ID |
GPL23126 |
Series (1) |
GSE233228 |
Gene expression profilings of neural progenitor cell derived from hiPSC with ROR2 knockdown |
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