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Sample GSM736588 Query DataSets for GSM736588
Status Public on Jun 03, 2011
Title Stam_MCF-7_2
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
line: MCF-7
cell organism: Human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757)
cell karyotype: cancer
cell sex: F
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: Yale_TFBS(Farnham):MCF-7_Farnham_protocol.pdf UW_Stam:Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069181
BioSample SAMN00622306
Named Annotation GSM736588_hg19_wgEncodeUwDnaseMcf7RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736588_hg19_wgEncodeUwDnaseMcf7AlnRep2.bam 2.3 Gb (ftp)(http) BAM
GSM736588_hg19_wgEncodeUwDnaseMcf7HotspotsRep2.broadPeak.gz 4.1 Mb (ftp)(http) BROADPEAK
GSM736588_hg19_wgEncodeUwDnaseMcf7PkRep2.narrowPeak.gz 2.0 Mb (ftp)(http) NARROWPEAK
GSM736588_hg19_wgEncodeUwDnaseMcf7RawRep2.bigWig 227.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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