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Sample GSM736496 Query DataSets for GSM736496
Status Public on Jun 03, 2011
Title Stam_GM12878_1
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics cell: GM12878
cell organism: Human
cell description: lymphoblastoid
cell karyotype: relatively normal
cell lineage: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
replicate: 1
Biomaterial provider Coriell;
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (3)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
Reanalyzed by GSE72089
SRA SRX069089
BioSample SAMN00622214
Named Annotation GSM736496_hg19_wgEncodeUwDnaseGm12878RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736496_hg19_wgEncodeUwDnaseGm12878AlnRep1.bam 1.1 Gb (ftp)(http) BAM
GSM736496_hg19_wgEncodeUwDnaseGm12878HotspotsRep1.broadPeak.gz 3.7 Mb (ftp)(http) BROADPEAK
GSM736496_hg19_wgEncodeUwDnaseGm12878PkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM736496_hg19_wgEncodeUwDnaseGm12878RawRep1.bigWig 158.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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