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GEO accession:
Sample GSM736496
Query DataSets for GSM736496
Status
Public on Jun 03, 2011
Title
Stam_GM12878_1
Sample type
SRA
Source name
GM12878
Organism
Homo sapiens
Characteristics
cell: GM12878
cell organism: Human
cell description: lymphoblastoid
cell karyotype: relatively normal
cell lineage: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
replicate: 1
Biomaterial provider
Coriell;
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/GM12878_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer II
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
Submission date
Jun 02, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (3)
GSE29692
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE51336
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by
GSE53962
Reanalyzed by
GSE54296
Reanalyzed by
GSE59016
Reanalyzed by
GSE72089
SRA
SRX069089
BioSample
SAMN00622214
Named Annotation
GSM736496_hg19_wgEncodeUwDnaseGm12878RawRep1.bigWig
Supplementary file
Size
Download
File type/resource
GSM736496_hg19_wgEncodeUwDnaseGm12878AlnRep1.bam
1.1 Gb
(ftp)
(http)
BAM
GSM736496_hg19_wgEncodeUwDnaseGm12878HotspotsRep1.broadPeak.gz
3.7 Mb
(ftp)
(http)
BROADPEAK
GSM736496_hg19_wgEncodeUwDnaseGm12878PkRep1.narrowPeak.gz
1.4 Mb
(ftp)
(http)
NARROWPEAK
GSM736496_hg19_wgEncodeUwDnaseGm12878RawRep1.bigWig
158.7 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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