|
| Status |
Public on Apr 01, 2014 |
| Title |
Dengue Patient Timepoint3 38 |
| Sample type |
RNA |
| |
|
| Source name |
Human whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: blood
collection time: 2 to 5 weeks after symptoms
igg: Neg
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from whole blood drawn in pax-gene vacutainer tubes by PAX-gene RNA kit (Qiagen). Quality control was performed with NanoDrop 1000 instrument
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Illumina TotalPrep -96 RNA Amplification Kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Data processing |
The data were analysed in Genespring GX11.5 software. Measurements less than 0.01 was set to 0.01. Data was then normalised at the 80th percentile.
|
| |
|
| Submission date |
Apr 29, 2011 |
| Last update date |
Apr 01, 2014 |
| Contact name |
Ahmad Nazri Mohamed Naim |
| E-mail(s) |
mohamedan@gis.a-star.edu.sg
|
| Phone |
65-98547654
|
| Organization name |
Genome institute of Singapore
|
| Department |
Infectious disease
|
| Lab |
lab 1
|
| Street address |
60 Biopolis Street, Genome, #02-01
|
| City |
Singapore |
| ZIP/Postal code |
138672 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL6883 |
| Series (1) |
| GSE28988 |
Global transcriptional assessment of consecutive samples from patients with dengue infection with association to dengue virus IgG serostatus |
|
