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Sample GSM718062 Query DataSets for GSM718062
Status Public on Apr 01, 2014
Title Dengue Patient Timepoint1 32
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics sample type: blood
collection time: Less than 72 hour after symptoms
igg: Neg
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from whole blood drawn in pax-gene vacutainer tubes by PAX-gene RNA kit (Qiagen). Quality control was performed with NanoDrop 1000 instrument
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep -96 RNA Amplification Kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were analysed in Genespring GX11.5 software. Measurements less than 0.01 was set to 0.01. Data was then normalised at the 80th percentile.
 
Submission date Apr 29, 2011
Last update date Apr 01, 2014
Contact name Ahmad Nazri Mohamed Naim
E-mail(s) mohamedan@gis.a-star.edu.sg
Phone 65-98547654
Organization name Genome institute of Singapore
Department Infectious disease
Lab lab 1
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL6883
Series (1)
GSE28988 Global transcriptional assessment of consecutive samples from patients with dengue infection with association to dengue virus IgG serostatus

Data table header descriptions
ID_REF
VALUE Normalized signal intensity from Genespring GX11.5 software.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 -0.7815738 0
ILMN_1651209 -2.4062662 0.1837349
ILMN_1651228 -0.14930105 0
ILMN_1651229 0.6724682 0.007530121
ILMN_1651235 -1.2860875 0.5060241
ILMN_1651236 -2.1236944 0.1551205
ILMN_1651237 -3.8634875 0.498494
ILMN_1651238 -0.9974427 0.8072289
ILMN_1651254 0.21964693 0.001506024
ILMN_1651260 -0.955482 0.8042169
ILMN_1651262 -0.6883559 0.001506024
ILMN_1651268 0.4321816 0.01957831
ILMN_1651278 -0.17177677 0.01054217
ILMN_1651282 0.38514757 0.1009036
ILMN_1651285 0.84599495 0.06626506
ILMN_1651286 -1.681324 0.1596386
ILMN_1651292 -1.1256986 0.3343374
ILMN_1651303 -1.0559125 0.435241
ILMN_1651309 -1.0421219 0.808735
ILMN_1651315 -0.3689518 0.001506024

Total number of rows: 24526

Table truncated, full table size 823 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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