|
| Status |
Public on Oct 01, 2023 |
| Title |
Gene expression of TP53 treated BMSCs _rep1 |
| Sample type |
RNA |
| |
|
| Source name |
BMSCs
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Bone Marrow Stem Cells (BMSCs)
treatment: TP53 treated
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was prepared from cells or cell derived extracellular vesicles using miRNeasy Serum/Plasma advanced kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
For each experiment, 100 ng RNAs were reverse treanscribed and followed by generation of cDNAs. The resulting cDNAs were transcribed and labled with cyanine 3-CTP and the labeled antisense cRNAs were purified using RNAeasy columns (QIAGEN).
|
| |
|
| Hybridization protocol |
The purified antisense cRNAs were hybridized to Agilent’s 8 × 60,000 microarrays (SurePrint G3 Human CGH Microarray 8x60K V2 ) at 45 °C for 16 hrs.
|
| Scan protocol |
Hybridized microarray slides were washed and scanned on the Agilent DNA Microarray Scanner (G2505C) using one color scan setting for 8x60k array slides
|
| Description |
TP53 treated BMSCs
BMSC_p53_cell_rep1
|
| Data processing |
The scanned images were analyzed with Feature Extraction Software (Agilent) to obtain background subtracted and spatially detrended Processed Signal intensities. Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.
|
| |
|
| Submission date |
Jan 20, 2023 |
| Last update date |
Oct 02, 2023 |
| Contact name |
Inyoul Lee |
| Organization name |
Institute for Systems Biology
|
| Street address |
401 Terry Ave. North
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platform ID |
GPL16699 |
| Series (2) |
| GSE223407 |
Dual targeted extracellular vesicles regulating oncogenic genes in pancreatic cancer [Human Array] |
| GSE223409 |
Dual targeted extracellular vesicles regulating oncogenic genes in pancreatic cancer |
|
