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Sample GSM692823 Query DataSets for GSM692823
Status Public on Sep 14, 2011
Title S4: corneas dissected 3 days after sham operated (lens left in) at stage 50
Sample type RNA
Source name corneas dissected 3 days after sham operated (lens left in) at stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: cornea
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegS4
Data processing RMA normalised using GenePattern software
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
VALUE RMA signal

Data table
AFFX-BioB-3_at 156.10573
AFFX-BioB-5_at 107.23046
AFFX-BioB-M_at 127.98533
AFFX-BioC-3_at 288.93906
AFFX-BioC-5_at 207.09938
AFFX-BioDn-3_at 1454.4634
AFFX-BioDn-5_at 412.41486
AFFX-CreX-3_at 2959.2632
AFFX-CreX-5_at 2249.3103
AFFX-DapX-3_at 1.6423247
AFFX-DapX-5_at 1.0953821
AFFX-DapX-M_at 1.121163
AFFX-LysX-3_at 0.97715807
AFFX-LysX-5_at 0.9621982
AFFX-LysX-M_at 1.1545838
AFFX-PheX-3_at 1.9868219
AFFX-PheX-5_at 0.7034385
AFFX-PheX-M_at 1.1947198
AFFX-r2-Bs-dap-3_at 0.9886922
AFFX-r2-Bs-dap-5_at 1.0074786

Total number of rows: 15611

Table truncated, full table size 403 Kbytes.

Supplementary file Size Download File type/resource
GSM692823_XenLensRegS2.CEL.gz 1.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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