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Sample GSM692821 Query DataSets for GSM692821
Status Public on Sep 14, 2011
Title S1: corneas dissected 3 days after sham operated (lens left in) at stage 50
Sample type RNA
Source name corneas dissected 3 days after sham operated (lens left in) at stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: cornea
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegS1
Data processing RMA normalised using GenePattern software
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
VALUE RMA signal

Data table
AFFX-BioB-3_at 144.17007
AFFX-BioB-5_at 88.90275
AFFX-BioB-M_at 110.409485
AFFX-BioC-3_at 215.36656
AFFX-BioC-5_at 154.65567
AFFX-BioDn-3_at 1326.1882
AFFX-BioDn-5_at 324.82086
AFFX-CreX-3_at 2659.577
AFFX-CreX-5_at 2036.4736
AFFX-DapX-3_at 1.7599416
AFFX-DapX-5_at 1.0016679
AFFX-DapX-M_at 0.88148767
AFFX-LysX-3_at 0.8924285
AFFX-LysX-5_at 0.98915166
AFFX-LysX-M_at 0.9561624
AFFX-PheX-3_at 1.5869483
AFFX-PheX-5_at 0.6251239
AFFX-PheX-M_at 1.2534587
AFFX-r2-Bs-dap-3_at 0.9375326
AFFX-r2-Bs-dap-5_at 1.1075084

Total number of rows: 15611

Table truncated, full table size 403 Kbytes.

Supplementary file Size Download File type/resource
GSM692821_XenLensRegS1.CEL.gz 1.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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