|
| Status |
Public on Mar 01, 2011 |
| Title |
Myers_MCF10A-Er-Src_1_TAM_1uM_36hr_Stanford |
| Sample type |
SRA |
| |
|
| Source name |
MCF10A-Er-Src
|
| Organism |
Homo sapiens |
| Characteristics |
cell: MCF10A-Er-Src
cell organism: Human
cell description: mammary gland, non-tumorigenic epithelial, inducible cell line
cell karyotype: stable and near-diploid
cell lineage: derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)
cell sex: F
replicate: 1
treatment: TAM_1uM_36hr
treatment description: 36h, 1uM tamoxifen (Myers)
obtainedby: Stanford
|
| Biomaterial provider |
Struhl laboratory
|
| Growth protocol |
Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Yale_TFBS(Struhl):MCF-10A_Struhl_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
|
| |
|
| Library strategy |
Bisulfite-Seq |
| Library source |
genomic |
| Library selection |
Reduced Representation |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
Reduced Representation
|
| Data processing |
For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
|
| |
|
| Submission date |
Mar 01, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (1) |
| GSE27584 |
DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha |
|
| Relations |
| SRA |
SRX066350 |
| BioSample |
SAMN00621831 |
