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Sample GSM6761375 Query DataSets for GSM6761375
Status Public on Nov 29, 2022
Title 15_Tumour
Sample type protein
 
Source name TNBC
Organism Homo sapiens
Characteristics disease state: TNBC
roi name: 15
segment name: Tumour
surface area: 127820.8736
nuclei count: 1330
qc flags: --
patient: TN24
age: 67
grade: 3
t: 1c
n: 1
mets post surgery (months): NA
followup: 2739
status: 0
reponse: CR
metastasis: NA
Extracted molecule protein
Extraction protocol Clinical FFPE samples on individual slides were obtained with appropriate ethics approval
Label NA
Label protocol DSP experiments were performed as per manufacturers DSP Slide Prep User Manual instructions. Slides were deparafinised, antigen retrieval by HIER, and overnight staining with antibody cocktail as per DSP Slide Prep User Manual. Slides were images and samples collected on DSP instrument
 
Hybridization protocol DSP eluates were hybridised as per manufacturers instructions in nCounter Readout User Manual.
Scan protocol Hybridised samples were loaded into Nanostring prep station and processed as per DSP Slide Prep User Manual. N counter was performed with default parameters, and counts from Ncounter uploaded back to DSP instrument
Data processing Counts were aligned and ERCC corrected automatically on the DSP instrument. This QC data was exported for analysis.
 
Submission date Nov 29, 2022
Last update date Nov 29, 2022
Contact name Arutha Kulasinghe
E-mail(s) arutha.kulasinghe@uq.edu.au
Organization name University of Queensland
Street address 37 kent st
City brisbane
ZIP/Postal code 4102
Country Australia
 
Platform ID GPL32896
Series (1)
GSE218973 Spatial Profiling Identifies Prognostic Features of Response to Adjuvant Therapy in Triple Negative Breast Cancer (TNBC)

Data table header descriptions
ID_REF
VALUE norm signal

Data table
ID_REF VALUE
CD11c 6.536624091
CD4 7.682299881
Ki-67 7.211972236
PD-1 5.966741284
PD-L1 2.339648961
HLA-DR 8.186146859
Beta-2-microglobulin 6.484061088
CD3 6.952268388
PanCk 9.281720761
CD68 8.474821032
CTLA4 4.302652411
CD20 5.956312224
SMA 13.79855768
CD56 6.921249903
CD45 8.464302152
CD8 8.111451507
Fibronectin 11.22307441
GZMB 8.443703299
NF1 8.08102506
Cl_Cas9 10.19278797

Total number of rows: 62

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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