|
| Status |
Public on Jan 30, 2023 |
| Title |
FFPE bone marrow, Responder Post-Treatment, biological rep2 |
| Sample type |
RNA |
| |
|
| Source name |
bone marrow, Responder #2, Post-Treatment
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: bone marrow
diagnosis: AML
Sex: Female
treatment response: Responder
time: 2nd
age: 46
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated from patient FFPE core bone marrow biopsies using the Qiagen's Rneasy FFPE Kit (Catalog# 73504)
|
| Label |
biotin
|
| Label protocol |
Afffymetrix WT Pico expression protocol, 10 ng total RNA input
|
| |
|
| Hybridization protocol |
16 h, 60 rpm, 40 C
|
| Scan protocol |
FS450_0001, followed by scan on Affymetrix 3000 7 G scanner
|
| Description |
091219PD12
|
| Data processing |
Data was analyzed using the default settings within the Applied Biosystem's Transcriptome Analysis Console (TAC) Software version 4.0.
|
| |
|
| Submission date |
Sep 09, 2022 |
| Last update date |
Jan 30, 2023 |
| Contact name |
Patrycja M Dubielecka |
| E-mail(s) |
patrycja_dubielecka-szczerba@brown.edu
|
| Organization name |
Warren Alpert Medical School of Brown University and Rhode Island Hospital
|
| Department |
Division of Hematology/Oncology, Department of Medicine
|
| Lab |
Dubielecka Lab
|
| Street address |
1 Hoppin St., Coro West, 5th Fl., Suite 5.36
|
| City |
Providence |
| State/province |
RI |
| ZIP/Postal code |
02903 |
| Country |
USA |
| |
|
| Platform ID |
GPL23126 |
| Series (2) |
| GSE213056 |
Transcriptomics of AML core bone marrow biopsies reveals distinct therapy response-specific osteo-mesenchymal profiles [microarray] |
| GSE213210 |
Transcriptomics of AML core bone marrow biopsies reveals distinct therapy response-specific osteo-mesenchymal profiles by RNA-seq and microarray analysis |
|
