|
| Status |
Public on Dec 31, 2023 |
| Title |
HNC022_TrainingSet |
| Sample type |
RNA |
| |
|
| Source name |
HNSCC
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: FFPE tissue specimen
diagnosis: HNSCC
age_at_first_dose: 78
Stage: II
treatment: nivolumab
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with miRNeasy FFPE kit (Qiagen) in accordance with the manufacture's protocol.
|
| Label |
biotin
|
| Label protocol |
RNA from each sample was labeled according to the manufacturers recommendations (Affymetrix).
|
| |
|
| Hybridization protocol |
Standard Affymetrix hybridization protocol
|
| Scan protocol |
Standard Affymetrix scanning protocol
|
| Data processing |
Gene-level signal were derived from CEL files using sst-RMA algorithm implemente in Affymetrix Expression Console software
|
| |
|
| Submission date |
Sep 01, 2022 |
| Last update date |
Dec 31, 2023 |
| Contact name |
Loris De Cecco |
| E-mail(s) |
loris.dececco@istitutotumori.mi.it
|
| Organization name |
IRCSS Istituto Nazionale Tumori
|
| Street address |
via Venezian 1
|
| City |
Milan |
| ZIP/Postal code |
20133 |
| Country |
Italy |
| |
|
| Platform ID |
GPL23126 |
| Series (2) |
| GSE212549 |
Expression profiling in R/M HNSCC treated with immunotherapy (training set) |
| GSE212551 |
Expression profiling in R/M HNSCC treated with immunotherapy |
|
