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Sample GSM646157 Query DataSets for GSM646157
Status Public on Mar 23, 2011
Title NHLF-r1
Sample type RNA
 
Source name cultured NHLF cells
Organism Homo sapiens
Characteristics cell line: NHLF
Extracted molecule total RNA
Extraction protocol Cells were lysed and RNA extracted using Qiagen Rneasy kit
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Data processing Data were processed using GenePattern and the Robust Multichip Average (RMA) method; quantile normalization; background correction; normalization by median scaling.
 
Submission date Dec 27, 2010
Last update date Mar 23, 2011
Contact name Jason Ernst
E-mail(s) jason.ernst@ucla.edu
Organization name UCLA
Department Biological Chemistry
Street address 615 Charles E Young Dr South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL3921
Series (2)
GSE26312 Mapping and analysis of chromatin state dynamics in nine human cell types (gene expression)
GSE26386 Systematic determination and analysis of chromatin state dynamics in nine human cell types

Data table header descriptions
ID_REF
VALUE The values are the signal as reported by RMA

Data table
ID_REF VALUE
1007_s_at 61.19036699
1053_at 43.75986737
117_at 8.646570266
121_at 22.45960345
1255_g_at 5.885539281
1294_at 17.75091451
1316_at 8.249264609
1320_at 7.356864893
1405_i_at 5.999445067
1431_at 6.531505822
1438_at 7.175918534
1487_at 12.58555123
1494_f_at 7.562338717
1598_g_at 913.0394459
160020_at 27.70623642
1729_at 83.93992463
1773_at 10.58962553
177_at 8.207516827
179_at 21.51061791
1861_at 33.60143541

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM646157_AGARS_p_TCGA_B12_RNA_ReDo_HT_HG-U133A_96-HTA_F03_443190.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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