|
Status |
Public on Mar 23, 2011 |
Title |
K562-r1 |
Sample type |
RNA |
|
|
Source name |
cultured K562 cells
|
Organism |
Homo sapiens |
Characteristics |
cell line: K562
|
Extracted molecule |
total RNA |
Extraction protocol |
Cells were lysed and RNA extracted using Qiagen Rneasy kit
|
Label |
biotin
|
Label protocol |
standard Affymetrix protocol
|
|
|
Hybridization protocol |
standard Affymetrix protocol
|
Scan protocol |
standard Affymetrix protocol
|
Data processing |
Data were processed using GenePattern and the Robust Multichip Average (RMA) method; quantile normalization; background correction; normalization by median scaling.
|
|
|
Submission date |
Dec 27, 2010 |
Last update date |
Mar 23, 2011 |
Contact name |
Jason Ernst |
E-mail(s) |
jason.ernst@ucla.edu
|
Organization name |
UCLA
|
Department |
Biological Chemistry
|
Street address |
615 Charles E Young Dr South
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095 |
Country |
USA |
|
|
Platform ID |
GPL3921 |
Series (2) |
GSE26312 |
Mapping and analysis of chromatin state dynamics in nine human cell types (gene expression) |
GSE26386 |
Systematic determination and analysis of chromatin state dynamics in nine human cell types |
|