|
Status |
Public on Aug 04, 2022 |
Title |
Methylation_EPIC_sample96 |
Sample type |
genomic |
|
|
Source name |
peripheral blood leukocytes
|
Organism |
Homo sapiens |
Characteristics |
race: African American (AA) gender: F age(yrs): 43.665982204 plate: WG5125121-MSA4 column: 4 row: A pedigreeid: pedid_121 subjectid: subjectid_817 phase: 1
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted from stored peripheral blood leukocytes using AutoGen FlexStar (AutoGen, Holliston, MA) and DNA was bisulfite converted using the EZ DNA Methylation Kit (Zymo Research, Irvine, CA)
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to IIllumina Infinium HumanMethylationEPIC BeadChip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
NA
|
Data processing |
For each chip, the Minfi R package was used to perform background correction and normalization. The regression on correlated probes (RCP) method was then used to adjust probe-type bias.
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|
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Submission date |
Aug 01, 2022 |
Last update date |
Aug 04, 2022 |
Contact name |
Lulu Shang |
E-mail(s) |
shanglu@umich.edu
|
Organization name |
University of Michigan
|
Department |
Biostatistics
|
Street address |
1415 Washington Heights
|
City |
Ann Arbor |
State/province |
Michigan |
ZIP/Postal code |
48105 |
Country |
USA |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE210255 |
Methylation data from stored peripheral blood leukocytes from African American participants in the GENOA study with Infinium HumanMethylationEPIC BeadChip |
GSE210256 |
Methylation data from stored peripheral blood leukocytes from African American participants in the GENOA study |
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