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Sample GSM63677

Query DataSets for GSM63677

Status

Public on Dec 21, 2005

Title

DRG010_c

Sample type

RNA

Source name

dorsal root ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MUR_b2_at	132.4072837	P	0.001178
AFFX-MURINE_b1_at	176.7448102	P	0.003181
AFFX-MURINE_B2_at	3953.9785221	P	0.000030
AFFX-b-ActinMur/M12481_5_at	35.6753693	A	0.239063
AFFX-b-ActinMur/M12481_M_at	159.3162438	P	0.000095
AFFX-b-ActinMur/M12481_3_at	1439.8151693	P	0.000044
AFFX-GapdhMur/M32599_5_at	29.6483702	A	0.083592
AFFX-GapdhMur/M32599_M_at	289.5360132	P	0.000147
AFFX-GapdhMur/M32599_3_at	3158.6332272	P	0.000044
AFFX-TransRecMur/X57349_5_at	1.6458559	A	0.749204
AFFX-TransRecMur/X57349_M_at	1.6411077	A	0.932339
AFFX-TransRecMur/X57349_3_at	28.6125093	P	0.011384
AFFX-PyruCarbMur/L09192_5_at	41.0734355	A	0.131361
AFFX-PyruCarbMur/L09192_MA_at	36.9399702	A	0.102165
AFFX-PyruCarbMur/L09192_MB_at	5.6912999	A	0.897835
AFFX-PyruCarbMur/L09192_3_at	149.8122964	P	0.004484
AFFX-18SRNAMur/X00686_5_at	101.3966311	P	0.000390
AFFX-18SRNAMur/X00686_M_at	299.6988452	P	0.000095
AFFX-18SRNAMur/X00686_3_at	231.4570874	P	0.000446
AFFX-DapX-5_at	15.1044716	A	0.078002

Total number of rows: 45101

Table truncated, full table size 1471 Kbytes.

Supplementary data files not provided

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