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Sample GSM63666

Query DataSets for GSM63666

Status

Public on Dec 21, 2005

Title

DRG008_b

Sample type

RNA

Source name

dorsal root ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were collected in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of amplified RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-YEL002c/WBP1_at	1.269412e+01	A	0.227636
AFFX-YEL018w/_at	5.605518e+00	A	0.617401
AFFX-YEL024w/RIP1_at	5.495048e+00	A	0.300606
AFFX-YEL021w/URA3_at	2.652511e+01	P	0.026111
AFFX-MUR_b2_at	4.666382e+02	P	0.000093
AFFX-MURINE_b1_at	5.514585e+02	P	0.000829
AFFX-MURINE_B2_at	1.034657e+04	P	0.000030
AFFX-b-ActinMur/M12481_5_at	1.021779e+02	A	0.205732
AFFX-b-ActinMur/M12481_M_at	3.788348e+02	P	0.000081
AFFX-b-ActinMur/M12481_3_at	5.160817e+03	P	0.000044
AFFX-GapdhMur/M32599_5_at	7.685163e+01	P	0.021902
AFFX-GapdhMur/M32599_M_at	6.397173e+02	P	0.000195
AFFX-GapdhMur/M32599_3_at	7.113334e+03	P	0.000044
AFFX-TransRecMur/X57349_5_at	1.745273e+01	A	0.382599
AFFX-TransRecMur/X57349_M_at	5.819953e+00	A	0.672921
AFFX-TransRecMur/X57349_3_at	2.916116e+01	P	0.012547
AFFX-PyruCarbMur/L09192_5_at	9.741174e+01	A	0.078002
AFFX-PyruCarbMur/L09192_MA_at	4.464495e+01	A	0.313723
AFFX-PyruCarbMur/L09192_MB_at	1.229550e+01	A	0.603080
AFFX-PyruCarbMur/L09192_3_at	2.656026e+02	P	0.000754

Total number of rows: 12488

Table truncated, full table size 414 Kbytes.

Supplementary data files not provided

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