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Sample GSM63440 Query DataSets for GSM63440
Status Public on Sep 01, 2005
Title MM-040_2
Sample type RNA
Source name CD138+ plasma cells obtained from bone marrow of MM patient
Organism Homo sapiens
Characteristics for full details see Table 1, Appendix_A from Agnelli, et al., "Molecular classification of multiple myeloma: a distinct transcriptional profile characterizes patients expressing CCND1 and negative for 14q32 translocations", J Clin Onc, in press
Extracted molecule total RNA
Label biotin-labeled UTP and CTP
Description gene expression profiles of purified plasma cells (PCs) obtained from MM-004 patient.
Keywords = Gene expression profiling
Keywords = Multiple myeloma
Keywords = TC classification
Keywords = Cyclin D
Keywords = IGH translocation
Data processing After scanning, the CEL files were processed using standard Robust Multi-Array average (RMA) procedure to generate gene expression intensity values. Detection calls were calculated using the default parameters of Affymetrix MAS 5.0 software package.
Submission date Jul 11, 2005
Last update date Jul 11, 2005
Contact name Luca Agnelli
Phone +390223903581
Organization name IRCCS Istituto Nazionale dei Tumori
Department Department of Advanced Diagnostics
Street address Venezian 1
ZIP/Postal code 20133
Country Italy
Platform ID GPL96
Series (1)
GSE2912 Molecular classification of multiple myeloma

Data table header descriptions
ID_REF Affymetrix probes number ID
VALUE RMA normalized intensity value
ABS_CALL The call in the absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)

Data table
1007_s_at 266.6069178 A
1053_at 66.36735778 P
117_at 113.2578832 A
121_at 708.3599626 P
1255_g_at 21.23277027 A
1294_at 134.5492743 A
1316_at 47.42885598 P
1320_at 27.4321822 A
1405_i_at 33.00556768 A
1431_at 19.97067235 P
1438_at 146.8356842 A
1487_at 210.4809472 M
1494_f_at 174.455805 A
1598_g_at 1883.905946 P
160020_at 309.3362821 A
1729_at 278.6395115 P
177_at 57.1376904 A
1773_at 101.1378228 A
179_at 601.4584159 M
1861_at 74.94993544 A

Total number of rows: 22283

Table truncated, full table size 540 Kbytes.

Supplementary data files not provided

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