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Sample GSM629853 Query DataSets for GSM629853
Status Public on Jul 13, 2012
Title Normal brain_nb-004
Sample type RNA
 
Source name Human normal brain
Organism Homo sapiens
Characteristics patient population: Chinese
tissue: brain
disease state: normal
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with mirVana miRNA Isolation kit (Ambion, Austin, TX) according to the manufacturer’s protocol. Quality control was performed with NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, Houston, TX).
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol with Illumina BeadReader
Data processing The data were background subtracted and normalized using quantile normalization with Illumina BeadStudio software v3.1
 
Submission date Nov 28, 2010
Last update date Jul 13, 2012
Contact name Wei Zhang
E-mail(s) zhangwei_vincent@yahoo.com.cn
Organization name Beijing Tiantan Hospital, Capital Medical University
Department Glioma Center, Department of Neurosurgery
Street address No.6 Tiantan Xili, Dongcheng District
City Beijing
ZIP/Postal code 100050
Country China
 
Platform ID GPL8179
Series (2)
GSE25631 Genome-wide analysis of microRNA expression in surgical specimens of primary glioblastoma multiform
GSE25632 Surgical specimens of primary glioblastoma multiform: mRNA and miRNA profiling

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 -7.941957 0.6688526
ILMN_3168038 1410.694 3.68E-38
ILMN_3167890 11189.67 3.68E-38
ILMN_3167526 -15.0215 0.7371276
ILMN_3167209 12.89895 0.4421796
ILMN_3168219 71.88759 0.03646262
ILMN_3167464 60.69441 0.06935459
ILMN_3167213 -12.19196 0.7107138
ILMN_3167057 4470.183 3.68E-38
ILMN_3168313 -16.60105 0.7513169
ILMN_3166972 -10.18059 0.6912102
ILMN_3168149 133.6717 0.000216434
ILMN_3168527 18.08077 0.3858317
ILMN_3167562 -3.976048 0.6277723
ILMN_3168099 684.3307 3.68E-38
ILMN_3168017 916.6489 3.68E-38
ILMN_3167545 3.717134 0.5442114
ILMN_3167951 101.4671 0.004401625
ILMN_3167172 -13.83968 0.7262467
ILMN_3167994 25.16032 0.3127864

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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