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Sample GSM629852 Query DataSets for GSM629852
Status Public on Jul 13, 2012
Title Normal brain_nb-003
Sample type RNA
 
Source name Human normal brain
Organism Homo sapiens
Characteristics patient population: Chinese
tissue: brain
disease state: normal
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with mirVana miRNA Isolation kit (Ambion, Austin, TX) according to the manufacturer’s protocol. Quality control was performed with NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, Houston, TX).
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol with Illumina BeadReader
Data processing The data were background subtracted and normalized using quantile normalization with Illumina BeadStudio software v3.1
 
Submission date Nov 28, 2010
Last update date Jul 13, 2012
Contact name Wei Zhang
E-mail(s) zhangwei_vincent@yahoo.com.cn
Organization name Beijing Tiantan Hospital, Capital Medical University
Department Glioma Center, Department of Neurosurgery
Street address No.6 Tiantan Xili, Dongcheng District
City Beijing
ZIP/Postal code 100050
Country China
 
Platform ID GPL8179
Series (2)
GSE25631 Genome-wide analysis of microRNA expression in surgical specimens of primary glioblastoma multiform
GSE25632 Surgical specimens of primary glioblastoma multiform: mRNA and miRNA profiling

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 -7.691957 0.6011085
ILMN_3168038 663.0807 3.68E-38
ILMN_3167890 9742.433 3.68E-38
ILMN_3167526 -18.94196 0.7344901
ILMN_3167209 25.36486 0.2027985
ILMN_3168219 97.42168 0.00068003
ILMN_3167464 181.9899 1.08E-09
ILMN_3167213 -18.36241 0.7281997
ILMN_3167057 6531.274 3.68E-38
ILMN_3168313 -7.941957 0.6042814
ILMN_3166972 -11.0215 0.6427395
ILMN_3168149 114.3308 8.52E-05
ILMN_3168527 45.76259 0.06642644
ILMN_3167562 17.7285 0.2808367
ILMN_3168099 583.7739 3.68E-38
ILMN_3168017 610.1489 3.68E-38
ILMN_3167545 4.08077 0.4478016
ILMN_3167951 145.774 8.17E-07
ILMN_3167172 8.387589 0.3924448
ILMN_3167994 18.08077 0.2769417

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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