|
| Status |
Public on Jan 01, 2023 |
| Title |
920_S39 |
| Sample type |
SRA |
| |
|
| Source name |
hearts from female mice
|
| Organism |
Mus musculus |
| Characteristics |
tissue: hearts from female mice
Sex: female
treatment: chow diet for 8 weeks followed by high-fat/high-sucrose diet 8 weeks
|
| Growth protocol |
16 week mice maintained on 12 hr light dark cycle fed chow diet for 8 weeks followed by high-fat/high-sucrose diet for 8 weeks. PMID: 23312289
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen miRNAeasy kit
QIAseq miRNA Library Kit
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
Data mapping using hisat2 (version 2.0.6) with paramters:--very-sensitive --score-min=C,-15,0 --seed 19
Read count extraction using htseq-count version 0.13.5
Assembly: mm10
Supplementary files format and content: csv text files include raw counts values for each sample
|
| |
|
| Submission date |
Jun 28, 2022 |
| Last update date |
Jan 01, 2023 |
| Contact name |
Karolina Elzbieta Kaczor Urbanowcz |
| E-mail(s) |
kkaczor@g.ucla.edu
|
| Phone |
4245357560
|
| Organization name |
UCLA
|
| Street address |
10833 Le Conte Avenue
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90024 |
| Country |
USA |
| |
|
| Platform ID |
GPL21493 |
| Series (1) |
| GSE207142 |
Small RNA sequencing of hearts from female mice on high fat diet, from 85 strains |
|
| Relations |
| BioSample |
SAMN29406209 |
| SRA |
SRX15935092 |
