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Status |
Public on Apr 01, 2023 |
Title |
1_expo_LB30 |
Sample type |
SRA |
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Source name |
in vitro, LB 30degreeC
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Organism |
Bacillus thuringiensis |
Characteristics |
cell type: in vitro, LB 30degreeC genotype: WT growth phase: exponential growth phase OD600nm=1
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Treatment protocol |
Harvested in RNA-later
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Growth protocol |
in vitro, LB 30°C or extracted from Galleria mellonella cadavers at 7 days-post-infection
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol RNA-Extraction + DNAse treatment ribosomal RNA depletion (RiboZero) + Truseq Stranded Total RNA prep
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
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Description |
1_expo_LB30
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Data processing |
bcl2fastq2-2.18.12 (demultiplex), Cutadapt 1.15 (adapter trimming), FastQC v0.11.5 (quality control) mapping (BWA v0.6.2-r126) FeatureCounts (v1.5.2) Assembly: GenBank (Assembly: GCA_000306745.1) Supplementary files format and content: tab-delimited text file including genes and count values for all samples
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Submission date |
Jun 22, 2022 |
Last update date |
Apr 01, 2023 |
Contact name |
Leyla Slamti |
E-mail(s) |
leyla.slamti@inrae.fr
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Phone |
+33134652382
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Organization name |
INRAE
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Department |
Micalis
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Lab |
GME
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Street address |
Domaine de Vilvert
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City |
Jouy-en-Josas |
State/province |
État |
ZIP/Postal code |
78350 |
Country |
France |
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Platform ID |
GPL32378 |
Series (1) |
GSE206636 |
A sporulation-independent way of life for Bacillus thuringiensis in the late stages of an infection |
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Relations |
BioSample |
SAMN29246299 |
SRA |
SRX15823496 |
Supplementary data files not provided |
SRA Run Selector![Help](/coreweb/images/long_help4.gif) |
Raw data are available in SRA |
Processed data are available on Series record |
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