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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 05, 2023 |
| Title |
Lung_Day_0_Aged_2 |
| Sample type |
SRA |
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| Source name |
Lung
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| Organism |
Mus musculus |
| Characteristics |
tissue: Lung
strain: C57BL/6 mice
timepoint: Day 0
infection: Flu PR8 infection
condition: Aged
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNAEasy (Qiagen)
Illumina Nextera
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Reads were aligned to mouse reference genome GRCm39
Demultiplexing was performed with bcl2fastq. Alignment was performed with Salmon (v1.4.0) and the GRCm39 reference transcriptome (Ensembl).
Assembly: mm10
Supplementary files format and content: salmon output
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| Submission date |
May 05, 2022 |
| Last update date |
Sep 05, 2023 |
| Contact name |
Weiguo Cui |
| E-mail(s) |
wcui04@gmail.com
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| Phone |
312-503-0332
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| Organization name |
Northwestern University
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| Department |
Pathology
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| Lab |
Cui
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| Street address |
303 E Chicago Ave
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| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60654 |
| Country |
USA |
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| Platform ID |
GPL19057 |
| Series (1) |
| GSE202324 |
Bulk RNA-seq of young and aged lungs following influenza A virus infection |
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| Relations |
| BioSample |
SAMN28102719 |
| SRA |
SRX15168302 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6108369_Day0_Aged2_quant.sf.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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