|
| Status |
Public on Feb 08, 2023 |
| Title |
Submandibular Gland 09 bulk |
| Sample type |
SRA |
| |
|
| Source name |
Submandibular Gland
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: F
age: 46
|
| Extracted molecule |
total RNA |
| Extraction protocol |
SMGs were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Alignment was performed usiing HiSat2 v2.1.0
Sam files converted to sorted bam files using Samtools v1.3
Reads were counted using subread v1.6.5
Assembly: hg38
Supplementary files format and content: tab-delimited featureCount text files for each bulk RNA-seq sample
|
| |
|
| Submission date |
Mar 23, 2022 |
| Last update date |
Feb 09, 2023 |
| Contact name |
Rose-Anne Romano |
| E-mail(s) |
rromano2@buffalo.edu
|
| Organization name |
SUNY University at Buffalo
|
| Street address |
Main Cir
|
| City |
Buffalo |
| State/province |
NY |
| ZIP/Postal code |
14215 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE199208 |
Single-cell and Bulk Transcriptomics of the Human Submandibular Gland Reveals Conserved Factors and Pathways [Bulk RNA-seq] |
| GSE199209 |
Single-cell and Bulk Transcriptomics of the Human Submandibular Gland Reveals Conserved Factors and Pathways |
|
| Relations |
| BioSample |
SAMN26891679 |
| SRA |
SRX14574557 |
